Name |
Description(PDB) |
Species |
Phasing |
Structure Determination |
PDB |
Res(Å) |
Year |
Journal |
Hammerhead |
Three dimensional structure of a hammerhead ribozyme |
N/A |
MIR |
X-ray diffraction |
1HMH |
2.6 |
1994 |
Nature |
Hammerhead |
The 2.2 A structure of a full-length catalytically active hammerhead ribozyme |
Schistosoma mansoni |
N/A |
X-ray diffraction |
3ZD5 |
2.2 |
2006 |
Cell |
Hammerhead |
Hammerhead Ribozyme G12A mutant pre-cleavage |
N/A |
MIR |
X-ray diffraction |
2QUS |
2.4 |
2008 |
PLoS Biol |
Hammerhead |
High-resolution full-length hammerhead ribozyme |
synthetic construct |
MR |
X-ray diffraction |
3ZP8 |
1.55 |
2013 |
J Mol Biol |
Hammerhead |
The crystal structure of an all-rna hammerhead ribozyme: a proposed mechanism for rna catalytic cleavage |
N/A |
MR |
X-ray diffraction |
1MME |
3.1 |
1995 |
Cell |
Hammerhead |
Full-length hammerhead ribozyme with g12a substitution at the general base position |
synthetic construct |
MR |
X-ray diffraction |
3ZD4 |
2.2 |
2014 |
Acta Crystallogr D Biol Crystallogr |
Hammerhead |
Inhibition of the hammerhead ribozyme cleavage reaction by site-specific binding of tb(iii) |
N/A |
N/A |
X-ray diffraction |
359D |
2.9 |
1998 |
Science |
Hammerhead |
Capturing the structure of a catalytic rna intermediate: rna hammerhead ribozyme, mg(ii)-soaked |
N/A |
N/A |
X-ray diffraction |
301D |
3.0 |
1996 |
Science |
Hammerhead |
Capturing the structure of a catalytic rna intermediate: the hammerhead ribozyme |
N/A |
N/A |
X-ray diffraction |
299D |
3 |
1996 |
Science |
Hammerhead |
Hammerhead ribozyme g12a mutant after cleavage |
N/A |
N/A |
X-ray diffraction |
2QUW |
2.2 |
2008 |
PLoS Biol |
Hammerhead |
The structural basis of hammerhead ribozyme self-cleavage |
N/A |
MAD |
X-ray diffraction |
379D |
3.1 |
1998 |
Cell |
Hammerhead |
Hammerhead ribozyme with 5'-5' g-g linkage: conformational change experiment |
N/A |
N/A |
X-ray diffraction |
1Q29 |
3 |
2003 |
J Mol Biol |
Hammerhead |
Two divalent metal ions and conformational changes play roles in the hammerhead ribozyme cleavage reaction-g12a mutant in mg2+ |
synthetic construct |
MR |
X-ray diffraction |
5DH6 |
2.78 |
2015 |
Biochemistry |
Hammerhead |
A three-dimensional model for the hammerhead ribozyme based on fluorescence measurements |
N/A |
N/A |
Fluorescence transfer |
1RMN |
N/A |
1994 |
Science |
Hammerhead |
Capturing the structure of a catalytic rna intermediate: rna hammerhead ribozyme, mn(ii)-soaked |
N/A |
N/A |
X-ray diffraction |
300D |
3 |
1996 |
Science |
Hammerhead |
Crosslinked Hammerhead Ribozyme Initial State |
N/A |
N/A |
X-ray diffraction |
1NYI |
2.85 |
2003 |
J Mol Biol |
Hammerhead |
Two divalent metal ions and conformational changes play roles in the hammerhead ribozyme cleavage reaction-WT ribozyme in Mg2+ |
synthetic construct |
MR |
X-ray diffraction |
5DQK |
2.71 |
2015 |
Biochemistry |
Hammerhead |
Full-length hammerhead ribozyme with Mn(II) bound |
N/A |
MR |
X-ray diffraction |
2OEU |
2 |
2008 |
Chem Biol |
Hammerhead |
Two divalent metal ions and conformational changes play roles in the hammerhead ribozyme cleavage reaction- G12A mutant in Zn2+ |
synthetic construct |
MR |
X-ray diffraction |
5DH8 |
3.3 |
2015 |
Biochemistry |
Hammerhead |
Two active site divalent ion in the crystal structure of the hammerhead ribozyme bound to a transition state analog-Mg2+ |
synthetic construct |
MR |
X-ray diffraction |
5EAO |
2.99 |
2016 |
Biochemistry |
Hammerhead |
Two divalent metal ions and conformational changes play roles in the hammerhead ribozyme cleavage reaction-WT ribozyme in Mn2+ at low pH |
synthetic construct |
MR |
X-ray diffraction |
5DI4 |
2.95 |
2015 |
Biochemistry |
Hammerhead |
Two divalent metal ions and conformational changes play roles in the hammerhead ribozyme cleavage reaction-WT ribozyme in Mn2+ at high pH |
synthetic construct |
MR |
X-ray diffraction |
5DI2 |
2.99 |
2015 |
Biochemistry |
Hammerhead |
Two divalent metal ions and conformational changes play roles in the hammerhead ribozyme cleavage reaction-G12A mutant in Mn2+ |
synthetic construct |
N/A |
X-ray diffraction |
5DH7 |
3.06 |
2015 |
Biochemistry |
Hammerhead |
Two active site divalent ion in the crystal structure of the hammerhead ribozyme bound to a transition state analog-Mn2+ |
synthetic construct |
N/A |
X-ray diffraction |
5EAQ |
3.2 |
2016 |
Biochemistry |
HDV |
The structure of the isolated, central hairpin of the hdv antigenomic ribozyme, nmr, 10 structures |
Hepatitis delta virus |
N/A |
NMR |
1ATO |
N/A |
1997 |
EMBO J |
HDV |
U1a spliceosomal protein/hepatitis delta virus genomic ribozyme complex |
Hepatitis delta virus, Homo sapiens |
MAD |
X-ray diffraction |
1DRZ |
2.3 |
1998 |
Nature |
HDV |
Crystal structure of a C75U mutant Hepatitis Delta Virus ribozyme precursor, in Cu2+ solution |
Hepatitis delta virus, Homo sapiens |
Se-MAD,Ir-SAD,MR |
X-ray diffraction |
1SJ4 |
2.7 |
2004 |
Nature |
HDV |
Hepatitis Delta Virus Gemonic Ribozyme Precursor, with Mg2+ Bound |
Hepatitis delta virus, Homo sapiens |
Se-MAD,Ir-SAD,MR |
X-ray diffraction |
1SJ3 |
2.2 |
2004 |
Nature |
HDV |
Crystal Structure of the Hepatitis Delta Virus Gemonic Ribozyme Product with C75U Mutaion, cleaved in Imidazole and Mg2+ solutions |
Hepatitis delta virus, Homo sapiens |
Se-MAD,Ir-SAD,MR |
X-ray diffraction |
1VC6 |
2.8 |
2004 |
Nature |
HDV |
Crystal Structure of the Wild Type Hepatitis Delta Virus Gemonic Ribozyme Precursor, in EDTA solution |
Homo sapiens |
Se-MAD,Ir-SAD,MR |
X-ray diffraction |
1VC5 |
3.4 |
2004 |
Nature |
HDV |
Crystal Structure of the Hepatitis Delta Virus Gemonic Ribozyme Precursor, with C75U mutaion, in Imidazole and Sr2+ solution |
Homo sapiens |
Se-MAD,Ir-SAD,MR |
X-ray diffraction |
1VC0 |
2.5 |
2004 |
Nature |
HDV |
Crystal Structure of the Hepatitis Delta Virus Gemonic Ribozyme Precursor, with C75U mutaion, in Ba2+ solution |
Homo sapiens |
Se-MAD,Ir-SAD,MR |
X-ray diffraction |
1VBZ |
2.8 |
2004 |
Nature |
HDV |
Crystal Structure of the Hepatitis Delta Virus Gemonic Ribozyme Precursor, with C75U mutaion, in EDTA solution |
Homo sapiens |
Se-MAD,Ir-SAD,MR |
X-ray diffraction |
1VBX |
2.7 |
2004 |
Nature |
HDV |
Crystal Structure of the Hepatitis Delta Virus Gemonic Ribozyme Precursor, with C75U mutaion, in Cobalt Hexammine solution |
Homo sapiens |
Se-MAD,Ir-SAD,MR |
X-ray diffraction |
1SJF |
2.75 |
2004 |
Nature |
HDV |
Crystal Structure of the Hepatitis Delta Virus Gemonic Ribozyme Precursor, with C75U mutaion, and Mn2+ bound |
Homo sapiens |
Se-MAD,Ir-SAD,MR |
X-ray diffraction |
1VBY |
2.9 |
2004 |
Nature |
HDV |
Hepatitis Delta Virus ribozyme precursor structure, with C75U mutation, bound to Tl+ and cobalt hexammine (Co(NH3)63+) |
Homo sapiens |
MR (Tl+) |
X-ray diffraction |
2OJ3 |
2.9 |
2007 |
Structure |
HDV |
Hepatitis Delta Virus gemonic ribozyme precursor with C75U mutation and bound to monovalent cation Tl+ |
Homo sapiens |
MR (Tl+) |
X-ray diffraction |
2OIH |
2.4 |
2007 |
Structure |
HDV |
A 1.9A crystal structure of the HDV ribozyme precleavage suggests both Lewis acid and general acid mechanisms contribute to phosphodiester cleavage |
Homo sapiens |
MR |
X-ray diffraction |
3NKB |
1.92 |
2010 |
Biochemistry |
HDV |
A Second Look at the HDV Ribozyme Structure and Dynamics. |
Homo sapiens |
Rebuild |
X-ray diffraction |
4PR6(原1CX0) |
2.3 |
2014 |
Nucleic Acids Res |
HDV |
Hepatitis delta virus ribozyme |
Hepatitis delta virus, Homo sapiens |
MAD |
X-ray diffraction |
1CX0 |
N/A |
1998 |
Nature |
HDV |
A Second Look at the HDV Ribozyme Structure and Dynamics. |
Homo sapiens |
Rebuild |
X-ray diffraction |
4PRF(原1VC7) |
2.4 |
2014 |
Nucleic Acids Res |
HDV |
Crystal Structure of the Hepatitis Delta Virus Gemonic Ribozyme Precursor, with C75U mutaion, in Sr2+ solution |
Hepatitis delta virus, Homo sapiens |
Se-MAD,Ir-SAD,MR |
X-ray diffraction |
1VC7 |
N/A |
2004 |
Nature |
Hairpin |
Crystal structure of a hairpin ribozyme in the catalytically-active conformation |
tobacco ringspot virus |
MR |
X-ray diffraction |
1M5K |
2.4 |
2002 |
Science |
Hairpin |
Crystal structure of a junctionless all-RNA hairpin ribozyme |
tobacco ringspot virus |
MR |
X-ray diffraction |
2OUE |
2.05 |
2006 |
Biochemistry |
Hairpin |
Transition State Stabilization by a Catalytic RNA |
tobacco ringspot virus |
MR |
X-ray diffraction |
1M5O |
2.2 |
2002 |
Science |
Hairpin |
Transition State Stabilization by a Catalytic RNA |
tobacco ringspot virus |
MR |
X-ray diffraction |
1M5P |
2.6 |
2002 |
Science |
Hairpin |
Transition State Stabilization by a Catalytic RNA |
tobacco ringspot virus |
MR |
X-ray diffraction |
1M5V |
2.4 |
2002 |
Science |
Hairpin |
An all-RNA Hairpin Ribozyme with mutation U39C |
tobacco ringspot virus |
MR |
X-ray diffraction |
1X9C |
2.2 |
2005 |
Biochemistry |
Hairpin |
An all-RNA Hairpin Ribozyme with mutation U39C |
tobacco ringspot virus |
MR |
X-ray diffraction |
1X9K |
3.2 |
2005 |
Biochemistry |
Hairpin |
The crystal structure of an all-RNA minimal Hairpin Ribozyme with mutant G8I at the cleavage site |
tobacco ringspot virus |
MR |
X-ray diffraction |
1ZFT |
2.3 |
2006 |
Biochemistry |
Hairpin |
The structure of an all-RNA minimal Hairpin Ribozyme with Mutation G8A at the cleavage site |
tobacco ringspot virus |
MR |
X-ray diffraction |
1ZFV |
2.4 |
2006 |
Biochemistry |
Hairpin |
The Structure of a minimal all-RNA Hairpin Ribozyme with the mutant G8U at the cleavage site |
tobacco ringspot virus |
MR |
X-ray diffraction |
1ZFX |
2.38 |
2006 |
Biochemistry |
Hairpin |
Crystal Structure of a minimal, mutant all-RNA hairpin ribozyme (U39C, G8MTU) |
tobacco ringspot virus |
MR |
X-ray diffraction |
2BCY |
2.7 |
2006 |
Biochemistry |
Hairpin |
Crystal Structure of a minimal, mutant all-RNA hairpin ribozyme (U39C, G8I, 2'deoxy A-1) |
tobacco ringspot virus |
MR |
X-ray diffraction |
2BCZ |
2.4 |
2006 |
Biochemistry |
Hairpin |
Crystal Structure of a minimal, native (U39) all-RNA hairpin ribozyme |
tobacco ringspot virus |
MR |
X-ray diffraction |
2D2K |
2.65 |
2005 |
Biochemistry |
Hairpin |
Crystal Structure of a minimal, all-RNA hairpin ribozyme with a propyl linker (C3) at position U39 |
tobacco ringspot virus |
MR |
X-ray diffraction |
2D2L |
2.5 |
2005 |
Biochemistry |
Hairpin |
Crystal structure of a minimal, all RNA hairpin ribozyme with modifications (g8dap, u39c) at ph 8.6 |
tobacco ringspot virus |
MR |
X-ray diffraction |
2FGP |
2.4 |
2006 |
Biochemistry |
Hairpin |
Crystal Structure of a junctioned hairpin ribozyme incorporating 9atom linker and 2'-deoxy 2'-amino U at A-1 |
tobacco ringspot virus |
MR |
X-ray diffraction |
2NPY |
2.65 |
2007 |
Acta Crystallogr D Biol Crystallogr |
Hairpin |
inimally Junctioned Hairpin Ribozyme Incorporates A38G Mutation and a 2',5'-Phosphodiester Linkage at the Active Site |
tobacco ringspot virus |
MR |
X-ray diffraction |
3B58 |
2.65 |
2008 |
RNA |
Hairpin |
Crystal Structure of a Minimally Hinged Hairpin Ribozyme Incorporating A38G mutation with a 2'OMe modification at the active site |
tobacco ringspot virus |
MR |
X-ray diffraction |
3B5A |
2.35 |
2008 |
RNA |
Hairpin |
Crystal Structure of a Minimally Hinged Hairpin Ribozyme Incorporating the Ade38Dap Mutation and a 2',5' Phosphodiester Linkage at the Active Site |
tobacco ringspot virus |
MR |
X-ray diffraction |
3B5F |
2.7 |
2008 |
RNA |
Hairpin |
Minimally Hinged Hairpin Ribozyme Incorporates A38DAP Mutation and 2'-O-methyl Modification at the Active Site |
tobacco ringspot virus |
MR |
X-ray diffraction |
3B5S |
2.25 |
2008 |
RNA |
Hairpin |
Minimally Hinged Hairpin Ribozyme Incorporates Ade38(2AP) and 2',5'-Phosphodiester Linkage Mutations at the Active Site |
tobacco ringspot virus |
MR |
X-ray diffraction |
3B91 |
2.75 |
2008 |
RNA |
Hairpin |
Minimally Junctioned Hairpin Ribozyme Incorporating A38(2AP) and A-1 2'-O-Me Modifications near Active Site |
tobacco ringspot virus |
MR |
X-ray diffraction |
3BBI |
2.35 |
2008 |
RNA |
Hairpin |
Miminally Junctioned Hairpin Ribozyme Incorporates A38C and 2'5'-phosphodiester Linkage within Active Site |
tobacco ringspot virus |
MR |
X-ray diffraction |
3BBK |
2.75 |
2008 |
RNA |
Hairpin |
Minimally Junctioned Hairpin Ribozyme Incorporates A38C and 2'O-Me Modification at Active Site |
tobacco ringspot virus |
MR |
X-ray diffraction |
3BBM |
2.65 |
2008 |
RNA |
Hairpin |
crystal structure of a minimal, mutant, all-RNA hairpin ribozyme (A38C, A-1OMA) grown from MgCl2 |
tobacco ringspot virus |
MR |
X-ray diffraction |
3CR1 |
2.25 |
2008 |
RNA |
Hairpin |
An all-RNA Hairpin Ribozyme with mutation A38N1dA |
tobacco ringspot virus |
MR |
X-ray diffraction |
3GS1 |
2.85 |
2009 |
J Am Chem Soc |
Hairpin |
An all-RNA hairpin ribozyme A38N1dA variant with a product mimic substrate strand |
tobacco ringspot virus |
MR |
X-ray diffraction |
3GS5 |
2.8 |
2009 |
J Am Chem Soc |
Hairpin |
An all-RNA hairpin ribozyme A38N1dA38 variant with a transition-state mimic substrate strand |
tobacco ringspot virus |
MR |
X-ray diffraction |
3GS8 |
2.9 |
2009 |
J Am Chem Soc |
Hairpin |
A Transition-State Interaction Shifts Nucleobase Ionization toward Neutrality To Facilitate Small Ribozyme Catalysis |
tobacco ringspot virus |
MR |
X-ray diffraction |
4G6P |
2.6 |
2012 |
J Am Chem Soc |
Hairpin |
Minimal Hairpin Ribozyme in the Transition State with G8I Variation |
tobacco ringspot virus |
MR |
X-ray diffraction |
4G6R |
2.9 |
2012 |
J Am Chem Soc |
Hairpin |
Minimal Hairpin Ribozyme in the Transition State with A38P Variation |
tobacco ringspot virus |
MR |
X-ray diffraction |
4G6S |
2.84 |
2012 |
J Am Chem Soc |
VS |
Crystal structure of the VS ribozyme - G638A mutant |
Neurospora |
SAD-Ir |
X-ray diffraction |
4R4V |
3.1 |
2015 |
Nat Chem Biol |
VS |
Crystal Structure of the VS ribozyme-A756G mutant |
Neurospora |
MR |
X-ray diffraction |
4R4P |
3.1 |
2015 |
Nat Chem Biol |
VS |
Crystal structure of the VS ribozyme - wild-type C634 |
Neurospora |
MR |
X-ray diffraction |
5V3I |
3.3 |
2017 |
J Am Chem Soc |
VS |
NMR structure of the A730 loop of the Neurospora VS ribozyme |
Neurospora |
N/A |
NMR |
2L5Z |
N/A |
2011 |
Nucleic Acids Res |
VS |
Solution Structure of the Active Site Stem-Loop of the VS Ribozyme |
N/A |
N/A |
NMR |
1TJZ |
N/A |
2004 |
J Mol Biol |
VS |
NMR Structure of the Active Conformation of the VS Ribozyme Cleavage Site |
N/A |
N/A |
NMR |
1OW9 |
N/A |
2003 |
PNAS |
VS |
NMR Localization of Divalent Cations at the Active Site of the Neurospora VS Ribozyme Provides Insights Into RNA-Metal Ion Interactions |
Neurospora |
N/A |
NMR |
2MIS |
N/A |
2014 |
Biochemistry |
VS |
NMR structure of the II-III-VI three-way junction from the VS ribozyme |
synthetic construct |
N/A |
NMR |
2N3Q |
N/A |
2015 |
RNA |
VS |
Solution structure of the vs ribozyme substrate stem-loop |
N/A |
N/A |
NMR |
1HWQ |
N/A |
2001 |
J Mol Biol |
VS |
NMR structure of the II-III-VI three-way junction from the VS ribozyme and identification of magnesium-binding sites using paramagnetic relaxation enhancement |
Neurospora crassa |
N/A |
NMR |
2N3R |
N/A |
2015 |
RNA |
VS |
Solution structure of the VS ribozyme stem-loop V in the presence of MgCl2 |
N/A |
N/A |
NMR |
1YN1 |
N/A |
2006 |
Biochemistry |
VS |
Solution structure of the Neurospora VS ribozyme stem-loop V in the presence of MgCl2 with modeling of bound manganese ions |
N/A |
N/A |
NMR |
1YN2 |
N/A |
2006 |
Biochemistry |
VS |
NMR structure of the VS ribozyme stem-loop V RNA in the absence of multivalent ions. |
N/A |
N/A |
NMR |
1TBK |
N/A |
2005 |
Biochemistry |
VS |
NMR structure of the III-IV-V three-way junction from the VS ribozyme |
Neurospora crassa |
N/A |
NMR |
2MTJ |
N/A |
2014 |
Biochemistry |
VS |
NMR structure of the III-IV-V three-way junction from the VS ribozyme and identification of magnesium-binding sites using paramagnetic relaxation enhancement |
Neurospora crassa |
N/A |
NMR |
2MTK |
N/A |
2014 |
Biochemistry |
VS |
NMR structure of the I-V kissing-loop interaction of the Neurospora VS ribozyme |
Neurospora crassa |
N/A |
NMR |
2MI0 |
N/A |
2014 |
Biochemistry |
glmS |
Pre-cleavage state of glmS ribozyme bound to glucose-6-phosphate |
Thermoanaerobacter tengcongensis |
MIRAS |
X-ray diffraction |
2HO7 |
2.9 |
2006 |
Science |
glmS |
Post-cleavage state of glmS ribozyme |
Thermoanaerobacter tengcongensis |
MIRAS |
X-ray diffraction |
2GCV |
2.1 |
2006 |
Science |
glmS |
Structural investigation of the GlmS ribozyme bound to its catalytic cofactor |
Bacillus anthracis |
SIRAS |
X-ray diffraction |
2NZ4 |
2.5 |
2007 |
Chemistry & biology |
glmS |
Pre-cleavage state of glmS ribozyme |
Thermoanaerobacter tengcongensis |
MIRAS |
X-ray diffraction |
2GCS |
2.1 |
2006 |
Science |
glmS |
Pre-cleavage state of glmS ribozyme |
Thermoanaerobacter tengcongensis |
MIRAS |
X-ray diffraction |
2H0X |
2.3 |
2006 |
Science |
glmS |
Post-cleavage state of glmS ribozyme |
Thermoanaerobacter tengcongensis |
MIRAS |
X-ray diffraction |
2H0W |
2.4 |
2006 |
Science |
glmS |
Post-cleavage state of glmS ribozyme |
Thermoanaerobacter tengcongensis |
MIRAS |
X-ray diffraction |
2HO6 |
2.8 |
2006 |
Science |
Twister |
Crystal Structure of the Twister Ribozyme with the Nucleotide 5'- to the Cleavage Site |
N/A |
MAD+SIRAS-Cs/Sm |
X-ray diffraction |
4QJH |
3.88 |
2014 |
Proc Natl Acad Sci U S A |
Twister |
Crystal Structure of Twister with the Nucleotide 5'- to the Cleavage Site |
N/A |
MR+SIR-Ir/Co |
X-ray diffraction |
4QJD |
3.1 |
2014 |
Proc Natl Acad Sci U S A |
Twister |
Crystal structure of the in-line aligned env22 twister ribozyme |
N/A |
Ir-SAD |
X-ray diffraction |
4RGE |
2.89 |
2014 |
Nat Commun |
Twister |
Crystal structure of the in-line aligned env22 twister ribozyme soaked with Mn2+ |
N/A |
Ir-SAD |
X-ray diffraction |
4RGF |
3.2 |
2014 |
Nat Commun |
Twister |
The crystal structure of OMe substituted twister ribozyme |
N/A |
MR |
X-ray diffraction |
5DUN |
2.64 |
2015 |
Angew Chem Int Ed Engl |
Twister |
Crystal Structure of Twister Ribozyme |
N/A |
Br-SAD |
X-ray diffraction |
4OJI |
2.3 |
2014 |
Nat Chem Biol |
Twister-sister |
Structure-based Insights into Self-Cleavage by a Four-way Junctional Twister-Sister Ribozyme |
N/A |
Ir-SAD |
X-ray diffraction |
5Y87 |
2.13 |
2017 |
Nat Commun |
Twister-sister |
Structure-based Insights into Self-Cleavage by a Four-way Junctional Twister-Sister Ribozyme |
N/A |
Ir-SAD |
X-ray diffraction |
5Y85 |
2 |
2017 |
Nat Commun |
Twister-sister |
Crystal Structure of the Twister Sister (TS) Ribozyme at 2.0 Angstrom |
N/A |
Br-SAD |
X-ray diffraction |
5T5A |
2 |
2017 |
Nat Chem Biol |
Hatchet |
The structure of Hatchet Ribozyme |
N/A |
MR |
X-ray diffraction |
6JQ5 |
2 |
2019 |
Proc Natl Acad Sci USA |
Hatchet |
Hatchet Ribozyme Structure soaking with Ir(NH3)6+ |
N/A |
Ir-SAD |
X-ray diffraction |
6JQ6 |
2.63 |
2019 |
Proc Natl Acad Sci USA |
Pistol |
The native structure of native pistol ribozyme |
N/A |
MR |
X-ray diffraction |
5K7C |
2.7 |
2016 |
Nat Chem Biol |
Pistol |
The structure of native pistol ribozyme, bound to Iridium |
N/A |
Ir-SAD |
X-ray diffraction |
5K7D |
2.68 |
2016 |
Nat Chem Biol |
Pistol |
The structure of pistol ribozyme, soaked with Mn2+ |
N/A |
MR |
X-ray diffraction |
5K7E |
3.27 |
2016 |
Nat Chem Biol |
Pistol |
Crystal structure of Pistol, a class of self-cleaving ribozyme |
N/A |
Sm-MAD |
X-ray diffraction |
5KTJ |
2.97 |
2017 |
Proc Natl Acad Sci USA |
Pistol |
The structure of pistol ribozyme bound to magnesium |
N/A |
Br-SAD |
X-ray diffraction |
6R47 |
3.1 |
2019 |
J Am Chem Soc |
Pistol |
Pistol ribozyme transition-state analog vanadate |
N/A |
MR |
X-ray diffraction |
6UEY |
2.8 |
2020 |
Angew Chem Int Ed Engl |
Pistol |
Pistol ribozyme product crystal structure |
N/A |
MR |
X-ray diffraction |
6UFJ |
2.6 |
2020 |
Angew Chem Int Ed Engl |
Pistol |
Pistol ribozyme transition-state analog vanadate |
N/A |
MR |
X-ray diffraction |
6UF1 |
3.1 |
2020 |
Angew Chem Int Ed Engl |
Pistol |
Pistol ribozyme transition-state analog vanadate |
N/A |
MR |
X-ray diffraction |
6UFK |
3.1 |
2020 |
Angew Chem Int Ed Engl |
Group I self-splicing intron |
Crystal structure of a self-splicing group Ⅰ intron with both exons |
Homo sapiens |
SIRAS;SAD;MAD |
X-ray diffraction |
1U6B |
3.1 |
2004 |
Nature |
Group I self-splicing intron |
Structure of the Tetrahymena Ribozyme: Base Triple Sandwich and Metal Ion at the Active Site |
N/A |
SAD-Ir;MAD-Ir |
X-ray diffraction |
1X8W |
3.8 |
2004 |
Mol Cell |
Group I self-splicing intron |
Crystal structure of an active group I ribozyme-product complex |
Staphylococcus virus Twort |
MIR |
X-ray diffraction |
1Y0Q |
3.6 |
2005 |
Nat Struct Mol Biol |
Group I self-splicing intron |
Crystal structure of a group I intron/two exon complex that includes all catalytic metal ion ligands. |
Homo sapiens |
N/A |
X-ray diffraction |
1ZZN |
3.37 |
2005 |
Science |
Group I self-splicing intron |
Apo L-21 ScaI Tetrahymena ribozyme |
Tetrahymena thermophila |
N/A |
Electron microscopy |
7EZ0 |
3.14 |
2021 |
Nature |
Group I self-splicing intron |
Crystal Structure of a Mutant (C109G,G212C) P4-P6 Domain of the Group I Intron from Tetrahymena Thermophilia |
N/A |
MR |
X-ray diffraction |
1L8V |
2.8 |
2002 |
Proc Natl Acad Sci U S A |
Group I self-splicing intron |
J4/5 Loop from the Candida albicans and Candida dubliniensis Group I Introns |
N/A |
N/A |
NMR |
1TUT |
N/A |
2004 |
Biochemistry |
Group I self-splicing intron |
Group I self-splicing intron P4-P6 domain mutant U131A (with isopropanol soaking) |
Tetrahymena thermophila |
N/A |
X-ray diffraction |
6BJX |
3.14 |
2018 |
Structure |
Group I self-splicing intron |
Group I self-splicing intron P4-P6 domain mutant U131A (without isopropanol soaking) |
Tetrahymena thermophila |
N/A |
X-ray diffraction |
6D8L |
3.14 |
2018 |
Structure |
Group I self-splicing intron |
Group I self-splicing intron P4-P6 domain mutant A125U/G126U |
Tetrahymena thermophila |
N/A |
X-ray diffraction |
6D8M |
3.7 |
2018 |
Structure |
Group I self-splicing intron |
Jak1 with compound 23 |
Homo sapiens |
N/A |
X-ray diffraction |
6DBN |
2.48 |
2019 |
J Med Chem |
Group I self-splicing intron |
Group I self-splicing intron P4-P6 domain mutant A230U |
Tetrahymena thermophila |
N/A |
X-ray diffraction |
6D8O |
2.8 |
2018 |
Structure |
Lariat capping ribozyme |
Speciation of a group I intron into a lariat capping ribozyme |
Didymium iridis |
MAD-Ir |
X-ray diffraction |
4P8Z |
3.85 |
2014 |
PNAS |
Lariat capping ribozyme |
Speciation of a group I intron into a lariat capping ribozyme (Circularly permutated ribozyme) |
Didymium iridis |
MAD-Ir |
X-ray diffraction |
4P95 |
2.5 |
2014 |
PNAS |
Lariat capping ribozyme |
peciation of a group I intron into a lariat capping ribozyme (Heavy atom derivative) |
Didymium iridis |
MAD-Ir |
X-ray diffraction |
4P9R |
2.7 |
2014 |
PNAS |
Lariat capping ribozyme |
Lariat-capping ribozyme (circular permutation form) |
Didymium iridis |
MAD-Ir |
X-ray diffraction |
6GYV |
2.5 |
2014 |
PNAS |
Lariat capping ribozyme |
Lariat-capping ribozyme with a shortened DP2 stem loop |
Didymium iridis |
MAD-Ir |
X-ray diffraction |
6G7Z |
3.3 |
2019 |
RNA |
Group II self-splicing intron |
Crystal Structure of a RNA Molecule Containing Domain 5 and 6 of the Yeast ai5g Group II Self-splicing Intron |
N/A |
MAD |
X-ray diffraction |
1KXK |
3 |
2002 |
Science |
Group II self-splicing intron |
Crystal structure of a self-spliced group II intron |
N/A |
MAD-Yb&Ir |
X-ray diffraction |
3BWP |
3.1 |
2008 |
Science |
Group II self-splicing intron |
Tertiary Architecture of the Oceanobacillus Iheyensis Group II Intron |
N/A |
N/A |
X-ray diffraction |
3IGI |
3.125 |
2009 |
RNA |
Group II self-splicing intron |
Crystal structure of a eukaryotic group II intron lariat |
Pylaiella littoralis |
MAD |
X-ray diffraction |
4R0D |
3.676 |
2014 |
Nature |
Group II self-splicing intron |
Structure of Oceanobacillus iheyensis group II intron in a ligand-free state in the presence of Tl+ and Mg2+ |
Oceanobacillus iheyensis |
MR |
X-ray diffraction |
4E8Q |
2.84 |
2012 |
Cell |
Group II self-splicing intron |
Oceanobacillus iheyensis group II intron domain 1 with iridium hexamine |
Oceanobacillus iheyensis HTE831 |
SAD-Ir |
X-ray diffraction |
4Y1N |
3 |
2015 |
Nat Chem Biol |
Group II self-splicing intron |
Oceanobacillus iheyensis group II intron domain 1 |
Oceanobacillus iheyensis HTE831 |
SAD-Ir |
X-ray diffraction |
4Y1O |
2.95 |
2015 |
Nat Chem Biol |
Group II self-splicing intron |
Structure of the lariat form of a chimeric derivative of the Oceanobacillus iheyensis group II intron in the presence of NH4+ and MG2+. |
Oceanobacillus iheyensis |
MR |
X-ray diffraction |
5J01 |
3.39 |
2016 |
Science |
Group II self-splicing intron |
Structure a of Group II Intron Complexed with its Reverse Transcriptase |
Lactococcus lactis |
N/A |
Electron microscopy |
5G2Y |
4.5 |
2016 |
Nat Struct Mol Biol |
Group II self-splicing intron |
Structure of the lariat form of a chimeric derivative of the Oceanobacillus iheyensis group II intron in the presence of NH4+, MG2+ and an inactive 5' exon. |
Oceanobacillus iheyensis |
MR |
X-ray diffraction |
5J02 |
3.493 |
2016 |
Science |
Group II self-splicing intron |
Specific phosphorothioate substitution within domain 6 of a group II intron ribozyme leads to changes in local structure and metal ion binding |
Saccharomyces cerevisiae |
N/A |
NMR |
6EZ0 |
N/A |
2018 |
J Biol Inorg Chem |
Group II self-splicing intron |
Structure of a group II intron retroelement after DNA integration |
Thermosynechococcus vestitus ,Thermosynechococcus vestitus BP-1 |
N/A |
Electron microscopy |
6MEC |
3.6 |
2019 |
Cell |
Bacterial RNase P |
RNase P protein from Bacillus subtilis |
Bacillus subtilis |
MIR |
X-ray diffraction |
1A6F |
2.6 |
1998 |
Science |
Bacterial RNase P |
RNase P protein from Thermotoga maritima |
Thermotoga maritima |
SAD-Se |
X-ray diffraction |
1NZ0 |
1.2 |
2003 |
Proc Natl Acad Sci U S A |
Bacterial RNase P |
Crystal structure of the specificity domain of Ribonuclease P RNA |
Bacillus subtilis |
MAD-Pb |
X-ray diffraction |
1NBS |
3.15 |
2003 |
Nature |
Bacterial RNase P |
Crystal structure of the specificity domain of Ribonuclease P of the A-type |
N/A |
SAD-Ba |
X-ray diffraction |
1U9S |
2.9 |
2004 |
Science |
Bacterial RNase P |
Crystal structure of the RNA subunit of Ribonuclease P. Bacterial A-type |
N/A |
SIRAS |
X-ray diffraction |
2A2E |
3.85 |
2005 |
Nature |
Bacterial RNase P |
Crystal Structure of Bacterial Ribonuclease P RNA |
N/A |
MAD-Os |
X-ray diffraction |
2A64 |
3.3 |
2005 |
Proc Natl Acad Sci U S A |
Bacterial RNase P |
Mapping metal-binding sites in the catalytic domain of bacterial RNase P RNA |
N/A |
MR |
X-ray diffraction |
3DHS |
3.6 |
2009 |
RNA |
Bacterial RNase P |
Structure of a Bacterial Ribonuclease P Holoenzyme in Complex with tRNA |
Thermotoga maritima |
MR / MAD / MIRAS |
X-ray diffraction |
3Q1Q |
3.8 |
2010 |
Nature |
Bacterial RNase P |
Crystal structure of a bacterial RNase P holoenzyme in complex with TRNA and in the presence of 5' leader |
Thermotoga maritima |
MR / MAD / MIRAS |
X-ray diffraction |
3Q1R |
4.2 |
2010 |
Nature |
Archaeal RNase P |
Crystal structure analysis of protein component Ph1496p of P.horikoshii ribonuclease P |
Pyrococcus horikoshii |
MR |
X-ray diffraction |
2CZW |
1.9 |
2006 |
Biochem Biophys Res Commun |
Archaeal RNase P |
cryo-EM structure of an archaeal Ribonuclease P |
Methanocaldococcus jannaschii DSM 2661, Methanocaldococcus jannaschii |
N/A |
Electron microscopy |
6K0A |
4.6 |
2019 |
Nat Commun |
Archaeal RNase P |
cryo-EM structure of archaeal Ribonuclease P with mature tRNA |
Methanocaldococcus jannaschii DSM 2661, Escherichia coli, Methanocaldococcus jannaschii |
N/A |
Electron microscopy |
6K0B |
4.3 |
2019 |
Nat Commun |
Nuclear RNase P |
Cryo-EM structure of yeast Ribonuclease P |
Saccharomyces cerevisiae S288C |
N/A |
Electron microscopy |
6AGB |
3.5 |
2018 |
Science |
Nuclear RNase P |
Cryo-EM structure of yeast Ribonuclease P with pre-tRNA substrate |
Saccharomyces cerevisiae S288C |
N/A |
Electron microscopy |
6AH3 |
3.48 |
2018 |
Science |
Nuclear RNase P |
Cryo-EM structure of human Ribonuclease P |
Homo sapiens |
N/A |
Electron microscopy |
6AHR |
3.9 |
2018 |
Cell |
Nuclear RNase P |
Cryo-EM structure of human Ribonuclease P with mature tRNA |
Homo sapiens |
N/A |
Electron microscopy |
6AHU |
3.66 |
2018 |
Cell |
Nuclear RNase P |
Crystal structure of human RPP40 |
Homo sapiens |
SAD-Se |
X-ray diffraction |
6AHV |
2.6 |
2018 |
Cell |
RNase MRP |
Structure of yeast RNase MRP holoenzyme |
Saccharomyces cerevisiae S288C |
N/A |
Electron microscopy |
6W6V |
3 |
2020 |
Nat Commun |
RNase MRP |
Cryo-EM structure of yeast Ribonuclease MRP |
Saccharomyces cerevisiae S288C |
N/A |
Electron microscopy |
7C79 |
2.5 |
2020 |
Science |
RNase MRP |
Cryo-EM structure of yeast Ribonuclease MRP with substrate ITS1 |
Saccharomyces cerevisiae S288C, Saccharomyces cerevisiae |
N/A |
Electron microscopy |
7C7A |
2.8 |
2020 |
Science |